SNP Profiles matching LP 1 /41 [POU]

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 Key

 1234567891011121314
_Input profile
CCAACGCCCTTTGTCCTTAAAGCTAACT
1._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
2._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
3._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
4._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
5._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
6._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
7._GC-08-050-1-61
CCAACGCCCTTTGTCCTTAAAGCTAACT
8._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
9._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
10._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
11._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
12._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
13._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
14._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
15._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
16._LP_1_/41_[POU]
CCAACGCCCTTTGTCCTTAAAGCTAACT
17._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
18._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
19._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
20._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
21._GC-05-055-2-06
CCAACGCCCTTTGTCCTTAAAGCTAACT
22._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
23._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
24._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
25._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
26._GC-05-148-4-01
CCAACGCCCTTTGTCCTTAAAGCTAACT
27._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAAGCTAACT
28._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAAGCTAA_
29._RUQ_86
CCAGCGCCCTTTGTCTTTAAAGCTAACT
30._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAGGCTAACT
31._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAGGCTAACT
32._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAGGCTAACT
33._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAGGCTAACT
34._MAN_15_/2_[BRA]
CCAACGCCCTTTGTCTTTAAGGCTAACT
35._GC-05-072-2-23
CCAACGCCCTTTGTCTTTAAGGCTAACT
36._GC-05-072-2-23
CCAACGCCCTTTGTCTTTAAGGCTAACT
37._GC-05-072-2-23
CCAACGCCCTTTGTCTTTAAGGCTAACT
38._GC-05-072-2-23
CCAACGCCCTTTGTCTTTAAGGCTAACT
39._GC-05-072-2-23
CCAACGCCCTTTGTCTTTAAGGCTAACT
40._RUQ_86
_AACGCC__-____CTAA_
 1516171819202122232425262728
_Input profile
AAGGCTCTGGGGAACCACGGGTCCACAG
1._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
2._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
3._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
4._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
5._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
6._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
7._GC-08-050-1-61
AAGGCTCTGGGGAACCACGGGTCCACAG
8._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
9._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
10._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
11._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
12._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
13._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
14._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
15._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
16._LP_1_/41_[POU]
AAGGCTCTGGGGAACCACGGGTCCACAG
17._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
18._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
19._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
20._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
21._GC-05-055-2-06
AAGGCTCTGGGGAACCACGGGTCCACAG
22._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
23._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
24._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
25._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
26._GC-05-148-4-01
AAGGCTCTGGGGAACCACGGGTCCACAG
27._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACGGGTCCACAG
28._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACGGGTCCACAG
29._RUQ_86
AAGGCTCTGGGGAACCACGGGTCCACAG
30._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
31._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
32._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
33._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
34._MAN_15_/2_[BRA]
AAGGCTCTGGGGAACCACCGGTCCACAG
35._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
36._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
37._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
38._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
39._GC-05-072-2-23
AAGGCTCTGGGGAACCACCGGTCCACAG
40._RUQ_86
___TTGGGG_CCACCGGTCCACAG
 2930313233343536373839   
_Input profile
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
1._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
2._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
3._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
4._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
5._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
6._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
7._GC-08-050-1-61
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
8._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
9._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
10._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
11._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
12._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
13._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
14._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
15._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
16._LP_1_/41_[POU]
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
17._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
18._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
19._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
20._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
21._GC-05-055-2-06
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
22._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
23._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
24._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
25._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
26._GC-05-148-4-01
GGAATTAGCGAACTGTCCATGGX_XX_XX_X
27._MAN_15_/2_[BRA]
GGAATTAGCGACCTGTCCATGGX_XX_XX_X
28._MAN_15_/2_[BRA]
GGAATTAGCGACCTGTCCATGGX_XX_XX_X
29._RUQ_86
GGAATTAGCGACCTGTCCATGGX_XX_XX_X
30._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
31._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
32._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
33._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
34._MAN_15_/2_[BRA]
GGAATTAACGAACCGTCCATGGX_XX_XX_X
35._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
36._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
37._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
38._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
39._GC-05-072-2-23
GGAATTAACGAACCGTCCATGGX_XX_XX_X
40._RUQ_86
_AATTAGCGACCTGTCC__X_XX_XX_X

Input profile: LP_1_/41_[POU]

 
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Mars Center for Cocoa Science, Brazil
Location: 5206 4
 Dapeng Zhang, 2016

1._IMC_119 GC-08-050-1-61

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._IMC_119 GC-08-050-1-61

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

3._IMC_119 GC-08-050-1-61

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

4._IMC_119 GC-08-050-1-61

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._IMC_119 GC-08-050-1-61

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

6._IMC_119 GC-08-050-1-61

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._IMC_119 GC-08-050-1-61

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._LP_1_/41_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 2 > FP
 Dapeng Zhang, 2016

9._LP_1_/41_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 1 > FP
 Dapeng Zhang, 2016

10._LP_1_/41_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 5
 Dapeng Zhang, 2016

11._LP_1_/41_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 4
 Dapeng Zhang, 2016

12._LP_1_/41_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5401 3
 Dapeng Zhang, 2016

13._LP_1_/41_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 3 > FP
 Dapeng Zhang, 2016

14._LP_1_/41_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 1 > FP
 Dapeng Zhang, 2016

15._LP_1_/41_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 5
 Dapeng Zhang, 2016

16._LP_1_/41_[POU]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5206 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

17._LP_1_/41_[POU] GC-05-055-2-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

18._LP_1_/41_[POU] GC-05-055-2-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

19._LP_1_/41_[POU] GC-05-055-2-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

20._LP_1_/41_[POU] GC-05-055-2-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

21._LP_1_/41_[POU] GC-05-055-2-06

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

22._LP_1_/41_[POU] GC-05-148-4-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

23._LP_1_/41_[POU] GC-05-148-4-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

24._LP_1_/41_[POU] GC-05-148-4-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

25._LP_1_/41_[POU] GC-05-148-4-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

26._LP_1_/41_[POU] GC-05-148-4-01

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

27._MAN_15_/2_[BRA]

97.4 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0297
 Dapeng Zhang, 2016

28._MAN_15_/2_[BRA]

97.4 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/476 T2
 Dapeng Zhang, 2016

29._MAN_15_/2_[BRA] RUQ_86

96.2 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

30._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 5 > FP
 Dapeng Zhang, 2016

31._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 3 > FP
 Dapeng Zhang, 2016

32._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 2 > FP
 Dapeng Zhang, 2016

33._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 1 > FP
 Dapeng Zhang, 2016

34._MAN_15_/2_[BRA]

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 4
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

35._MAN_15_/2_[BRA] GC-05-072-2-23

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

36._MAN_15_/2_[BRA] GC-05-072-2-23

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

37._MAN_15_/2_[BRA] GC-05-072-2-23

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

38._MAN_15_/2_[BRA] GC-05-072-2-23

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

39._MAN_15_/2_[BRA] GC-05-072-2-23

93.6 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

40._MAN_15_/2_[BRA] RUQ_86

93.5 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1253 8TcSNP1165 9TcSNP1144 10TcSNP1075
11TcSNP1062 12TcSNP1060 13TcSNP998 14TcSNP994 15TcSNP953
16TcSNP929 17TcSNP917 18TcSNP891 19TcSNP872 20TcSNP723
21TcSNP645 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25